HPC Lab

BMI - OSU

HPC Lab

Publications

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Journal/Book Conference Report Abstract/Poster

2010

• Development of a code-agnostic computational infrastructure for the dynamic generation of accident progression even trees
  U.V. Catalyurek, B. Rutt, K. Metzroth, A. Hakobyan, T. Aldemir, R. Denning, S. Dunagan, D. Kunsman
  Reliability Engineering & System Safety, 2010, to appear.
  
• On scalability of hypergraph models for sparse matrix partitioning
  B. Ucar, U. V. Catalyurek
  Proc. of the PDP 2010: 18th Euromicro International Conference on Parallel, Distributed and Network-Based Computing, 2010, to appear.
  

2009

• Stroma classification for neuroblastoma on graphics processors
  A. Ruiz, O. Sertel, M. Ujaldon, U. Catalyurek, J. Saltz, M. N. Gurcan
  International Journal of Data Mining and Bioinformatics, vol. 3, pg. 280-298, 2009
  
• An Integrated Approach to Locality Conscious Processor Allocation and Scheduling of Mixed Parallel Applications
  N. Vydyanathan, U. V. Catalyurek, T. M. Kurc, P. Sadayappan, J. H. Saltz
  IEEE Transactions on Parallel and Distributed Systems, vol. 20, no. 8, 2009
  
• A Repartitioning Hypergraph Model for Dynamic Load Balancing
  U. Catalyurek, E.G. Boman, K.D. Devine, D. Bozdag, R. Heaphy, L.A. Fisk
  Journal of Parallel and Distributed Computing, vol. 69, no. 8, pg. 711-724, 2009
  
• Hypergraph-based Dynamic Partitioning and Load Balancing
  U. Catalyurek, D. Bozdag, E.G. Boman, K.D. Devine, R. Heaphy, L.A. Fisk
  Advanced Computational Infrastructures for Parallel and Distributed Adaptive Applications, Wiley Publishing, 2009, accepted for publication
  
• Processing of Large-Scale Biomedical Images on a Cluster of Multi-Core CPUs and GPUs
  U.V. Catalyurek, T. Hartley, O. Sertel, M. Ujaldon, A. Ruiz, J. Saltz, M. Gurcan
  High Performance and Large Scale Computing, IOS Press, 2009, accepted for publication
  
• Compaction of Schedules and a Two-Stage Approach for Duplication-Based DAG Scheduling
  D. Bozdag, F. Ozguner, U. Catalyurek
  IEEE Transactions on Parallel and Distributed Systems, vol. 20, no. 6, pg. 857-871, 2009
  
• Computer-aided prognosis of neuroblastoma on whole-slide images: Classification of stromal development
  O. Sertel, J. Kong, H. Shimada, U. V. Catalyurek, J. H. Saltz, M. N. Gurcan
  Pattern Recognition, vol. 42, no. 6, pg. 1093-1103, 2009
  
• Investigating the Use of GPU-Accelerated Nodes for SAR Image Formation  Slides
  T. D. R. Hartley, A. R. Rasih, C. A. Berdanier, F. Ozguner, U. V. Catalyurek
  Proc. of the IEEE International Conference on Cluster Computing, Workshop on Parallel Programming on Accelerator Clusters (PPAC), 2009
  
• Coordinating the Use of GPU and CPU for Improving Performance of Compute Intensive Applications  Slides
  G. Teodoro, R. Sachetto, O. Sertel, M. Gurcan, W. Meira, U. Catalyurek, R. Ferreira
  Proc. of the 2009 IEEE International Conference on Cluster Computing, 2009
  
• Parallel Short Sequence Mapping for High Throughput Genome Sequencing
  D. Bozdag, C.C. Barbacioru, U. Catalyurek
  Proc. of 23rd Int'l. Parallel and Distributed Processing Symposium, 2009
  
• A Component-Based Framework for the Cell Broadband Engine
  T. D. R. Hartley, U. V. Catalyurek
  Proc. of 23rd Int'l. Parallel and Distributed Processing Symposium, The 18th Heterogeneous Computing Workshop (HCW 2009), 2009
  
• A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets
  D. Bozdag, J. D. Parvin, U. Catalyurek
  Proc. of 1st Int'l. Conf. on Bioinformatics and Computational Biology, Springer, vol. 5462, pg. 151-163, 2009
  
• A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments
  H. G. Ozer, D. Bozdag, T. Camerlengo, J. Wu, Y.-W. Huang, T. Hartley, J. D. Parvin, T. Huang, U. V. Catalyurek, K. Huang
  Proc. of 1st Int'l. Conf. on Bioinformatics and Computational Biology, Springer, vol. 5462, pg. 320-330, 2009
  
• Identification of a Breast Cancer Associated Regulatory Network
  J. D. Parvin, Z. Kais, M. Arora, S. Kotian, A. Zha, D. Ransburgh, D. Bozdag, U. Catalyurek, K. Huang
  Bioinformatics, 2009 Ohio Collaborative Conference, IEEE Computer Society, pg. 71-75, 2009
  
• Hypergraph Partitioning-Based Fill-Reducing Ordering  Paper
  U. V. Catalyurek, C. Aykanat, E. Kayaaslan
  Tech. Report, no. OSUBMI-TR-2009-n02 and BU-CE-0904, 2009, submitted for publication
  
• Parallel Computing Strategies for Sequence Mapping of NGS Data  Slides
  D. Bozdag, T. Camerlengo, H. G. Ozer, J. Trgovcich, T. Meulia, K. Huang, U. Catalyurek
  Extended abstract, 9th International Conference for the Critical Assesment of Massive Data Analysis, 2009
  
• Combinatorial Algorithms Enabling Scientific Computing: Petascale Algorithms for Graph Coloring and Matching
  D. Bozdag, U. Catalyurek, F. Dobrian, A. Gebremedhin, M. Halappanavar, A. Pothen
  Poster, 21st Supercomputing Conference, 2009
  
• Parallelization of Mapping Algorithms for Next Generation Sequencing Applications
  D. Bozdag, C. C. Barbacioru, U. V. Catalyurek
  Abstract, Combinatorial Scientific Computing, Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik, no. 09061, 2009
  
• Getting Started with Zoltan: A Short Tutorial
  K. D. Devine, E. G. Boman, L. A. Riesen, U. V. Catalyurek, C. Chevalier
  Abstract, Combinatorial Scientific Computing, Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik, no. 09061, 2009
  
• Combinatorial Problems in High-Performance Computing: Partitioning
  R. Bisseling, T. v. Leeuwen, U. V. Catalyurek
  Abstract, Combinatorial Scientific Computing, Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik, no. 09061, 2009
  

2008

• Dynamic generation of accident progression event trees
  A. Hakobyan, T. Aldemir, R. Denning, S. Dunagan, D. Kunsman, B. Rutt, U. Catalyurek
  Nuclear Engineering and Design, vol. 238, no. 12, pg. 3457 - 3467, 2008
  
• Large-Scale Biomedical Image Analysis in Grid Environments
  Kumar, V.S., Rutt, B., Kurc, T., Catalyurek, U.V., Pan, T.C., Chow, S., Lamont, S., Martone, M., Saltz, J.H.
  IEEE Transactions on Information Technology in Biomedicine, vol. 12, no. 2, pg. 154-161, 2008
  
• A framework for scalable greedy coloring on distributed-memory parallel computers
  D. Bozdag, A. H. Gebremedhin, F. Manne, E. G. Boman, U. V. Catalyurek
  Journal of Parallel and Distributed Computing, vol. 68, no. 4, pg. 515-535, 2008
  
• A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows
  N. Vydyanathan, U. V. Catalyurek, T. M. Kurc, P. Sadayappan, J. H. Saltz
  2008 International Conference on Parallel Processing (ICPP), pg. 254-261, 2008
  
• Biomedical Image Analysis on a Cooperative Cluster of GPUs and Multicores
  T. D. R. Hartley, U. V. Catalyurek, A. Ruiz, F. Igual, R. Mayo, M. Ujaldon
  Proceedings of the 22nd Annual International Conference on Supercomputing, ICS 2008, pg. 15-25, 2008
  
• Combinatorial algorithms for computational science and engineering
  E. G. Boman, D. Bozdag, U. V. Catalyurek, K. D. Devine, A. H. Gebremedhin, P. D. Hovland, A. Pothen
  Journal of Physics: Conference Series, vol. 125, pg. , 2008
  
• A Dynamic Scheduling Approach for Coordinated Wide-Area Data Transfers using GridFTP
  G. Khanna, U. Catalyurek, T. Kurc, R. Kettimuthu, P. Sadayappan, J. Saltz
  Proc. of 22th International Parallel and Distributed Processing Symposium (IPDPS), 2008
  
• Using Overlays for Efficient Data Transfer over Shared Wide-Area Networks
  G. Khanna, U. Catalyurek, T. Kurc, R. Kettimuthu, P. Sadayappan, I. Foster, J. Saltz
  Proceedings of SC2008 High Performance Computing, Networking, and Storage Conference, 2008
  
• On two-dimensional sparse matrix partitioning: Models, Methods, and a Recipe  Paper
  U. V. Catalyurek, C. Aykanat, B. Ucar
  Tech. Report, no. OSUBMI_TR_2008_n04, 2008, To appear in SIAM J. Sci. Comput.
  

2007

• Toward Optimizing Latency Under Throughput Constraints for Application Workflows on Clusters
  N. Vydyanathan, U. Catalyurek, T. Kurc, P. Sadayappan, J. Saltz
  Proceedings of the 13th International Euro-Par Conference (Euro-Par 2007), pg. 173-183, 2007
  
• Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters
  G. Khanna, U. Catalyurek, T. Kurc, P. Sadayappan, J. Saltz
  Proceedings of the 13th International Euro-Par Conference (Euro-Par 2007), pg. 214-223, 2007
  
• Enabling high performance computational science through combinatorial algorithms
  E. G. Boman, D. Bozdag, U. V. Catalyurek, K. D. Devine, A. H. Gebremedhin, P. D. Hovland, A. Pothen, M. M. Strout
  Journal of Physics: Conference Series, vol. 78, pg. 012058 (10pp), 2007
  
• Hypergraph-based Dynamic Load Balancing for Adaptive Scientific Computations
  U. Catalyurek, E.G. Boman, K.D. Devine, D. Bozdag, R. Heaphy, L.A. Fisk
  Proc. of 21st Int'l. Parallel and Distributed Processing Symposium, pg. 1-11, 2007, Best Algorithms Paper Award
  
• Pathological image analysis using the GPU: Stroma classification for neuroblastoma
  A. Ruiz, O. Sertel, M. Ujaldon, U. Catalyurek, J. Saltz, M. Gurcan
  Proc. of IEEE Int. Conf. on Bioinformatics and Biomedicine, pg. 78-85, 2007
  
• Optimizing multiple queries on scientific datasets with partial replicas
  L. Weng, U. V. Catalyurek, T. M. Kurc, G. Agrawal, J. H. Saltz
  Proc. of 8th IEEE/ACM International Conference on Grid Computing (GRID 2007), pg. 259-266, 2007
  
• An Efficient and Reliable Scientific Workflow System
  T. Tavares, G. Teodoro, T. M. Kurc, R. Ferreira, D. Neto, W. Meira, U. V. Catalyurek, S. Hastings, S. Oster, S. Langella, J. H. Saltz
  Prof. of Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2007), pg. 445-452, 2007
  
• Performance vs. accuracy trade-offs for large-scale image analysis applications
  V. S. Kumar, T. M. Kurc, J. Kong, U. V. Catalyurek, M. N. Gurcan, J. H. Saltz
  Proc. of the 2007 IEEE International Conference on Cluster Computing, pg. 100-109, 2007
  

2006

• Supporting Scalable and Distributed Data Subsetting and Aggregation in Large-scale Seismic Data Analysis
  X. Zhang, B. Rutt, U. Catalyurek, T. Kurc, J. Saltz
  The Journal of High Performance Computing Applications, vol. 20, no. 3, pg. 423-438, 2006
  
• Parallel Hypergraph Partitioning for Scientific Computing
  K.D. Devine, E.G. Boman, R.T. Heaphy, R.H. Bisseling, U.V. Catalyurek
  Proceedings of 20th International Parallel and Distributed Processing Symposium (IPDPS), IEEE, 2006
  
• Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O
  G. Khanna, N. Vydyanathan, U. C. a. T. Kurc, S. Krishnamoorthy, P. Sadayappan, J. Saltz
  Proceedings of the Fifteen International Symposium on High Performance Distributed Computing (HPDC-15), pg. 241-252, 2006
  
• A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs with File Sharing
  G. Khanna, U. C. a. T. Kurc, P. Sadayappan, J. Saltz
  Proceedings of the 12th International Workshop on Job Scheduling Strategies for Parallel Processing (JSSPP 2006), In Conjunction with SIGMETRICS 2006, 2006
  
• Large Image Correction and Warping in a Cluster Environment
  V. S. Kumar, B. Rutt, T. Kurc, U. Catalyurek, S. Chow, S. Lamont, M. Martone, J. Saltz
  Proceedings of SC2006 High Performance Computing, Networking, and Storage Conference, 2006
  
• On Creating Efficient Object-relational Views of Scientific Datasets
  S. Narayanan, T. Kurc, U. Catalyurek, J. Saltz
  2006 International Conference on Parallel Processing, 2006
  
• Scheduling of Tasks with Batch-shared I/O on Heterogeneous Systems
  N. Vydyanathan, G. Khanna, T. Kurc, U. Catalyurek, P. Wyckoff, J. Saltz, P. Sadayappan
  Proceedings of 20th International Parallel and Distributed Processing Symposium (IPDPS), Heterogeneous Computing Workshop (HCW 2006), 2006
  
• An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications
  N. Vydyanathan, S. Krishnamoorthy, G. Sabin, U. Catalyurek, T. Kurc, P. Sadayappan, J. Saltz
  2006 International Conference on Parallel Processing, 2006
  
• Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications
  N. Vydyanathan, S. Krishnamoorthy, G. Sabin, U. Catalyurek, T. Kurc, P. Sadayappan, J. Saltz
  Proceedings of 2006 IEEE International Conference on Cluster Computing, 2006
  
• Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries
  L. Weng, U. Catalyurek, T. Kurc, G. Agrawal, J. Saltz
  2006 International Conference on Parallel Processing, 2006
  
• A task duplication based bottom-up scheduling algorithm for heterogeneous environments
  D. Bozdag, U.V. Catalyurek, F. Ozguner
  Proc. of 20th Int'l. Parallel and Distributed Processing Symposium, 2006
  

2005

• XML database support for distributed execution of data-intensive scientific workflows.
  S. Hastings, M. Ribeiro, S. Langella, S. Oster, U. V. Catalyurek, T. Pan, K. Huang, R. Ferreira, J. H. Saltz, T. M. Kurc
  SIGMOD Record, vol. 34, no. 3, pg. 50-55, 2005
  
• A Simulation and Data Analysis System for Large Scale,Data-Driven Oil Reservoir Simulation Studies
  T. Kurc, U. Catalyurek, X. Zhang, J. Saltz, R. Martino, M. Wheeler, M. Peszynska, A. Sussman, C. Hansen, M. Sen, R. Seifoullaev, P. Stoffa, C. Torres-Verdin, M. Parashar
  Concurrency and Computation: Practice and Experience., vol. 17, no. 11, pg. 1441-1467, 2005
  
• Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies
  M. Parashar, H. Klie, U. V. Catalyurek, T. M. Kurc, V. Matossian, J. H. Saltz, M. F. Wheeler
  Future Generation Computer Systems, vol. 21, no. 1, pg. 19-26, 2005
  
• Tools for Efficient Subsetting and Pipelined Processing of Large Scale, Distributed Biomedical Image Data
  M. Ribeiro, T. Kurc, T. Pan, K. Huang, U. Catalyurek, X. Zhang, S. Langella, S. Hastings, S. Oster, R. Ferreira, J. Saltz
  , Elsevier, 2005
  
• A Hypergraph Partitioning Based Approach for Scheduling of Tasks with Batch-shared I/O
  G. Khanna, N. Vydyanathan, T. Kurc, U. Catalyurek, P. Wyckoff, J. Saltz, P. Sadayappan
  Proceedings of the 5th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005
  
• Design and Implementation of a Data Server Using a Peer-to-Peer Storage System
  V. S. Kumar, T. M. Kurc, U. V. Catalyurek, J. H. Saltz
  High Performance Computing Symposium (HPC 2005), SCS Spring Simulation Multiconference, 2005
  
• A Runtime Framework for Partial Replication and Its Application for On-Demand Data Exploration
  S. Narayanan, U. Catalyurek, T. Kurc, V. S. Kumar, J. Saltz
  High Performance Computing Symposium (HPC 2005), SCS Spring Simulation Multiconference, 2005
  
• Servicing Seismic and Oil Reservoir Simulation Data through Grid Data Services
  S. Narayanan, T. M. Kurc, U. V. Catalyurek, J. H. Saltz
  Proceedings of VLDB Workshop Data Management in Grid 2005 (VLDB DMG'05, pg. 98-109, 2005
  
• Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying
  B. Rutt, V. S. Kumar, T. Pan, T. Kurc, U. Catalyurek, Y. Wang, J. Saltz
  The 2005 IEEE International Conference on Cluster Computing, 2005
  
• A Parallel Distance-2 Graph Coloring Algorithm for Distributed Memory Computers
  D. Bozdag, U.V. Catalyurek, A.H. Gebremedhin, F. Manne, E.G. Boman, F. Ozguner
  Proc. of 1st Int'l. Conf. on High Performance Computing and Communications, Springer, vol. 3726, pg. 796-806, 2005
  
• A Scalable Parallel Graph Coloring Algorithm for Distributed Memory Computers
  E.G. Boman, D. Bozdag, U.V. Catalyurek, A.H. Gebremedhin, F. Manne
  Proc. of 11th Int'l. Euro-Par Conf. on Parallel Processing, Springer, vol. 3648, pg. 241-251, 2005
  
• A Task Duplication Based Scheduling Algorithm Using Partial Schedules
  D. Bozdag, F. Ozguner, E. Ekici, U. V. Catalyurek
  Proc. of 34th Int'l. Conf. on Parallel Processing, pg. 630-637, 2005
  
• Servicing Range Queries on Multidimensional Datasets with Partial Replicas
  L. Weng, U. Catalyurek, T. Kurc, G. Agrawal, J. Saltz
  Proceedings of the 5th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005
  
• Parallel Hypergraph Partitioning for Scientific Computing
  E.G. Boman, K.D. Devine, R.T. Heaphy, U.V. Catalyurek, R.H. Bisseling
  Tech. Report, no. SAND2005-2796C, 2005
  

2004

• Permuting Sparse Rectangular Matrices into Block-Diagonal Form
  C. Aykanat, A. Pinar, U. V. Catalyurek
  SIAM Journal on Scientific Computing, vol. 26, no. 6, pg. 1860-1879, 2004
  
• A Distributed Data Management Middleware for Data-Driven Application Systems
  S. Langella, S. Hastings, S. Oster, T. Kurc, U. Catalyurek, J. Saltz
  Proceedings of 2004 IEEE International Conference on Cluster Computing, 2004
  
• Application of Grid-enabled Technologies for Solving Optimization Problems in Data-Driven Reservoir Studies
  M. Parashar, H. Klie, U. Catalyurek, T. Kurc, V. Matossian, J. Saltz, M.F. Wheeler
  Proceedings of Workshop on Dynamic Data Driven Application Systems (International Conference on Computational Science), pg. 805-812, 2004
  
• Use of PVFS for Efficient Execution of Jobs with Pipeline-Shared I/O
  N. Vydyanathan, G. Khanna, T. Kurc, U. Catalyurek, P. Wyckoff, J. Saltz, P. Sadayappan
  Proceedings of the 5th IEEE/ACM International Workshop on Grid Computing (Grid 2004), 2004
  
• An Approach for Automatic Data Virtualization
  L. Weng, G. Agrawal, U. Catalyurek, T. Kurc, S. Narayanan, J. Saltz
  Proceedings of the Thirteen International Symposium on High Performance Distributed Computing (HPDC-13), IEEE Press, 2004
  
• Supporting SQL-3 Aggregations on Grid-based Data Repositories
  L. Weng, G. Agrawal, U. Catalyurek, J. Saltz
  Proceedings of the 17th International Workshop on Languages and Compilers for Parallel Computing, 2004
  
• Serving Queries to Multi-Resolution Datasets on Disk-based Storage Clusters
  X. Zhang, T. Pan, U. Catalyurek, T. Kurc, J. Saltz
  Proceedings of 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid2004), 2004
  
• Strategies for Using Additional Resources in Parallel Hash-based Join Algorithms
  X. Zhang, T. Kurc, T. Pan, U. Catalyurek, S. Narayanan, P. Wyckoff, J. Saltz
  Proceedings of the Thirteen International Symposium on High Performance Distributed Computing (HPDC-13), IEEE Press, 2004
  

2003

• The Virtual Microscope
  U. Catalyurek, M. D. Beynon, C. Chang, T. Kurc, A. Sussman, J. Saltz
  IEEE Transactions on Information Technology in BioMedicine, vol. 7, no. 4, pg. 230-248, 2003
  
• Database Support for Data-driven Scientific Applications in the Grid
  S. Narayanan, T. Kurc, U. Catalyurek, J. Saltz
  Parallel Processing Letters, vol. 13, no. 2, pg. 245-271, 2003
  
• Impact of High Performance Sockets on Data Intensive Applications
  P. Balaji, J. Wu, T. Kurc, U. Catalyurek, D. K. Panda, J. Saltz
  Proceedings of the Twelfth International Symposium on High Performance Distributed Computing (HPDC-12), IEEE Press, 2003
  
• Image Processing for the Grid: A Toolkit for Building Grid-enabled Image Processing Applications.
  S. Hastings, T. Kurc, S. Langella, U. Catalyurek, T. Pan, J. Saltz
  CCGrid: IEEE International Symposium on Cluster Computing and the Grid, IEEE Press, 2003
  
• Applying Database Support for Large Scale Data Driven Science in Distributed Environments
  S. Narayanan, U. Catalyurek, T. Kurc, X. Zhang, J. Saltz
  Proceedings of the Fourth International Workshop on Grid Computing (Grid 2003), pg. 141-148, 2003
  
• Driving Scientific Applications by Data in Distributed Environments
  J. Saltz, U. Catalyurek, T. Kurc, M. Gray, S. Hastings, S. Langella, S. Narayanan, R. Martino, S. Bryant, M. Peszynska, M. Wheeler, A. Sussman, M. Beynon, C. Hansen, D. Stredney, a. D. Sessanna
  Dynamic Data Driven Application Systems Workshop, held jointly with ICCS 2003, 2003
  

2002

• Processing Large-Scale Multidimensional Data in Parallel and Distributed Environments
  M. Beynon, C. Chang, U. Catalyurek, T. Kurc, A. Sussman, H. Andrade, R. Ferreira, J. Saltz
  Parallel Computing, vol. 28, no. 5, pg. 827-859, 2002, Special Issue on Data Intensive Computing
  
• Persistent Caching in a Multiple Query Optimization Framework
  H. Andrade, T. Kurc, U. Catalyurek, A. Sussman, J. Saltz
  Proceedings of the Sixth Workshop on Languages, Compilers and Run-time Systems for Scalable Computers, Springer-Verlag, 2002
  
• Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems
  M. D. Beynon, T. Kurc, U. Catalyurek, A. Sussman, J. Saltz
  Proceedings of 16th International Parallel and Distributed Processing Symposium (IPDPS), 2002
  
• Executing Multiple Pipelined Data Analysis Operations in the Grid
  M. Spencer, R. Ferreira, M. Beynon, T. Kurc, U. Catalyurek, A. Sussman, J. Saltz
  Proceedings of the 2002 ACM/IEEE SC02 Conference, ACM Press, 2002
  

2001

• Distributed Processing of Very Large Datasets with DataCutter
  M. D. Beynon, T. Kurc, U. Catalyurek, C. Chang, A. Sussman, J. Saltz
  Parallel Computing, vol. 27, no. 11, pg. 1457-1478, 2001
  
• Visualization of Large Datasets with the Active Data Repository
  T. Kurc, U. Catalyurek, C. Chang, A. Sussman, J. Saltz
  IEEE Computer Graphics and Applications, vol. 21, no. 4, pg. 24-33, 2001
  
• Performance Optimization for Data Intensive Grid Applications
  M. D. Beynon, A. Sussman, U. Catalyurek, T. Kurc, J. Saltz
  Proceedings of the Third Annual International Workshop on Active Middleware Services (AMS2001), 2001
  
• A Fine-Grain Hypergraph Model for 2D Decomposition of Sparse Matrices
  U. V. Catalyurek, C. Aykanat
  Proceedings of 15th International Parallel and Distributed Processing Symposium (IPDPS), 2001
  
• A Hypergraph-Partitioning Approach for Coarse-Grain Decomposition
  U. V. Catalyurek, C. Aykanat
  ACM/IEEE SC2001, 2001
  

1999

• Hypergraph-Partitioning Based Decomposition for Parallel Sparse-Matrix Vector Multiplication
  U. V. Catalyurek, C. Aykanat
  IEEE Transactions on Parallel and Distributed Systems, vol. 10, no. 7, pg. 673-693, 1999
  
• PaToH: A Multilevel Hypergraph Partitioning Tool, Version 3.0
  U. V. Catalyurek, C. Aykanat
  User Manual, 1999