OSU Department of Biomedical Informatics

Tahsin M. Kurc Ph.D.

phone: (614) 292-6568
fax: (614) 688-6600

email:



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mailing address
3015 Graves Hall
333 W. 10th Ave.
Columbus, OH 43210


Dr. Kurc received his Ph.D. in computer science from Bilkent University, Turkey, in 1997 and his B.S. in electrical and electronics engineering from Middle East Technical University, Turkey, in 1989. He was a Postdoctoral Research Associate at the University of Maryland from 1997 to 2000. Before coming to the Ohio State University, he worked in the Bioinformatics Division of Pathology at Johns Hopkins University and Medical Institutions.

Research

Project Involvement

Imaging Informatics

Medical Informatics

Multiscale Computing

Dr. Kurc's research areas include high-performance data-intensive computing, runtime systems for efficient storage and processing of very large scientific datasets, domain decomposition methods for unstructured domains, parallel algorithms for scientific and engineering applications, and scientific visualization on high-performance machines.

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Grant Highlights


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Publications

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Joel H. Saltz, Scott Oster, Shannon L. Hastings, Stephen Langella, Renato A. Ferreira, Justin D. Permar, Ashish Sharma, David W. Ervin, Tony C. Pan, Umit V. Catalyurek, Tahsin M. Kurc, "Translational research design templates, Grid computing, and HPC", IEEE International Symposium on Parallel and Distributed Processing., : pp. 1-15, June, 2008.

Gaurav Khanna, Umit V. Catalyurek, Tahsin M. Kurc, R. Kettimuthu, P. Sadayappan, Joel H. Saltz, "A Dynamic Scheduling Approach for Coordinated Wide-Area Data Transfers using GridFTP", Proceedings of 22nd IEEE International Parallel & Distributed Processing Symposium (IPDPS 2008), : pp. 1-12, April, 2008.

Vijay S. Kumar, Sivaramakrishnan Narayanan, Tahsin M. Kurc, Metin N. Gurcan, Joel H. Saltz, "Analysis and Semantic Querying in Large Biomedical Image Datasets", Computer magazine, issue on Data-Intensive Computing, Vol. 41 (4) : pp. 52-59, April, 2008.

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Presentations

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Stephen Langella, Scott Oster, Shannon L. Hastings, Frank Siebenlist, Joshua Phillips, David W. Ervin, Justin D. Permar, Tahsin M. Kurc, Joel H. Saltz, "The Cancer Biomedical Informatics Grid (caBIG™) Security Infrastructure", in Proceedings of 2007 AMIA Annual Symposium, Chicago, Illinois, 2007

Scott Oster, Stephen Langella, Shannon L. Hastings, David W. Ervin, Ravi Madduri, Tahsin M. Kurc, Frank Siebenlist, Peter A. Covitz, Krishnakant Shanbhag, Ian Foster, Joel H. Saltz, "caGrid 1.0: A Grid Enterprise Architecture for Cancer Research", in Proceedings of American Medical Informatics Association (AMIA) 2007 Annual Symposium, Chicago, IL, 2007

Vijay S. Kumar, Tahsin M. Kurc, Umit V. Catalyurek, Metin N. Gurcan, Joel H. Saltz, "Performance vs. Accuracy Trade-offs for Large-scale Image Analysis Applications", in Proceedings of IEEE Cluster 2007: Conference on Cluster Computing, Austin, Texas, 2007

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Tech Reports

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Joel H. Saltz, Shannon L. Hastings, Stephen Langella, Scott Oster, David W. Ervin, Ashish Sharma, Tony C. Pan, Metin N. Gurcan, Subhashree Madhavan, Ravi Madduri, Enrico Caserta, Justin D. Permar, Renato A. Ferreira, Philip R. Payne, Umit V. Catalyurek, Gustavo Leone, M. Ostrowski, Kenneth H Buetow, Krishnakant Shanbhag, Eliot Siegel, Ian Foster, Tahsin M. Kurc, "e-Science, caGrid, and Translational Biomedical Research", Technical Report, No. OSUBMI_TR_2008_n01, Biomedical Informatics, 2008.

Sivaramakrishnan Narayanan, Tahsin M. Kurc, Joel H. Saltz, "Support for Spatial Queries in Semantically Annotated Scientific Datasets", Technical Report, No. OSUBMI_TR_2007_n14, Biomedical Informatics, 2007.

Ashish Sharma, Tony C. Pan, Berkant Barla Cambazoglu, Shannon L. Hastings, Metin N. Gurcan, Tahsin M. Kurc, Joel H. Saltz, "VirtualPACS - A Federating Gateway to Access REmote Image Data Resources over the Grid", Technical Report, Biomedical Informatics, 2007.


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Abstracts

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L. Weng, Umit V. Catalyurek, Tahsin M. Kurc, Gagan Agrawal, Joel H. Saltz, "Optimizing Multiple Queries on Scientific Datasets with Partial Replicas", Proceedings of the 8th IEEE/ACM International Conference on Grid Computing (GRID 2007), Austin, Texas, September 2007

Joel H. Saltz, Tony C. Pan, Ashish Sharma, Tahsin M. Kurc, Stephen Langella, Shannon L. Hastings, Scott Oster, Metin N. Gurcan, "gridImage-Grid Computing to Middleware Support Human Markup and Multiple CAD Systems", 92nd Scientific Assembly and Annual Meeting of Radiological Society of North America (RSNA), Chicago, Illinois, November 2006

Joel H. Saltz, Tahsin M. Kurc, Stephen Langella, Shannon L. Hastings, Scott Oster, Ashish Sharma, Metin N. Gurcan, "caGrid (Cancer Grid) Middleware- Connecting Healthcare to the Grid", 92nd Scientific Assembly and Annual Meeting of Radiological Society of North America (RSNA), Chicago, Illinois, November 2006

Publications

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Tahsin M. Kurc, Shannon L. Hastings, Stephen Langella, Ashish Sharma, Tony C. Pan, Scott Oster, David W. Ervin, Justin D. Permar, Sivaramakrishnan Narayanan, Y Gil, E Deelman, Mary Hall, Joel H. Saltz, "HPC and Grid Computing for Integrative Biomedical Research", Int. J. High Perform. Comput. Appl., 23 (3) : pp. 252-264, August, 2009.

Joel H. Saltz, Tahsin M. Kurc, Shannon L. Hastings, Stephen Langella, Scott Oster, David W. Ervin, Ashish Sharma, Tony C. Pan, Metin N. Gurcan, Justin D. Permar, Renato A. Ferreira, Philip R. Payne, Umit V. Catalyurek, Enrico Caserta, Gustavo Leone, M. Ostrowski, Ravi Madduri, Ian Foster, Subhashree Madhavan, Kenneth H Buetow, Krishnakant Shanbhag, Eliot Siegel, "e-Science, caGrid, and Translational Biomedical Research", IEEE Computer, 41 (11) : pp. 58-66, November, 2008.

Joel H. Saltz, Scott Oster, Shannon L. Hastings, Stephen Langella, Renato A. Ferreira, Justin D. Permar, Ashish Sharma, David W. Ervin, Tony C. Pan, Umit V. Catalyurek, Tahsin M. Kurc, "Translational research design templates, Grid computing, and HPC", IEEE International Symposium on Parallel and Distributed Processing., : pp. 1-15, June, 2008.

Gaurav Khanna, Umit V. Catalyurek, Tahsin M. Kurc, R. Kettimuthu, P. Sadayappan, Joel H. Saltz, "A Dynamic Scheduling Approach for Coordinated Wide-Area Data Transfers using GridFTP", Proceedings of 22nd IEEE International Parallel & Distributed Processing Symposium (IPDPS 2008), : pp. 1-12, April, 2008.

Vijay S. Kumar, Sivaramakrishnan Narayanan, Tahsin M. Kurc, Metin N. Gurcan, Joel H. Saltz, "Analysis and Semantic Querying in Large Biomedical Image Datasets", Computer magazine, issue on Data-Intensive Computing, Vol. 41 (4) : pp. 52-59, April, 2008.

Tony C. Pan, R. Ridgway, R. Sharp, Lee Cooper, Alexandra Gulacy, Ashish Sharma, O. Irfanoglu, Raghu Machiraju, Tahsin M. Kurc, P. Wenzel, A. de Bruin, Gustavo Leone, Joel H. Saltz, Kun Huang, "An Imaging Workflow for Characterizing Phenotypical Change in Terabyte Sized Mouse Model Datasets", Journal of Bioinformatics, April, 2008.

Umit V. Catalyurek, Sivaramakrishnan Narayanan, Olcay Sertel, Berkant Barla Cambazoglu, Tony C. Pan, Ashish Sharma, Shannon L. Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurc, Metin N. Gurcan, Joel H. Saltz, "Service-based Access to and Processing of Large Scientific Datasets", High Performance Computing (HPC) and Grids in Action: Advances in Parallel Computing, Vol. 16 March, 2008.

Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurc, Umit V. Catalyurek, Tony C. Pan, Sunny Chow, Stephan Lamont, Maryann Martone, Joel H. Saltz, "Large-scale Biomedical Image Analysis in Grid Environments", IEEE Transactions on Information Technology in Biomedicine, Vol. 12 (2) : pp. 154-161, March, 2008.

Stephen Langella, Shannon L. Hastings, Scott Oster, Tony C. Pan, Ashish Sharma, Justin D. Permar, David W. Ervin, Berkant Barla Cambazoglu, Tahsin M. Kurc, Joel H. Saltz, "Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment", Journal of the American Medical Informatics Association, 15 (3) : pp. 363-373, March, 2008.

Scott Oster, Stephen Langella, Shannon L. Hastings, David W. Ervin, Ravi Madduri, Joshua Phillips, Tahsin M. Kurc, Frank Siebenlist, Peter A. Covitz, Krishnakant Shanbhag, Ian Foster, Joel H. Saltz, "caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research", Journal of the American Medical Informatics Association, Vol. 15 (2) : pp. 138-149, December, 2007.

Scott Oster, Shannon L. Hastings, Stephen Langella, David W. Ervin, Ravi Madduri, Tahsin M. Kurc, Frank Siebenlist, Ian Foster, Krishnakant Shanbhag, Peter A. Covitz, Joel H. Saltz, "caGrid 1.0: A Grid Enterprise Architecture for Cancer Research", Proceedings of the 2007 AMIA Annual Symposium, : pp. 573-577, November, 2007.

Stephen Langella, Scott Oster, Shannon L. Hastings, Frank Siebenlist, Joshua Phillips, David W. Ervin, Justin D. Permar, Tahsin M. Kurc, Joel H. Saltz, "The Cancer Biomedical Informatics Grid (caBIG) Security Infrastructure", Proceedings of the 2007 AMIA Annual Symposium, November, 2007.

Vijay S. Kumar, Tahsin M. Kurc, Umit V. Catalyurek, Metin N. Gurcan, Joel H. Saltz, "Performance vs. Accuracy Trade-offs for Large-scale Image Analysis Applications", Proceedings of the IEEE Cluster 2007, September, 2007.

Gaurav Khanna, Umit V. Catalyurek, Tahsin M. Kurc, P. Sadayappan, Joel H. Saltz, "Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters", Proceedings of Euro-Par 2007 Parallel Processing, 4641 : pp. 214-223, August, 2007.

Naga Vydyanathan, Umit V. Catalyurek, Tahsin M. Kurc, Joel H. Saltz, P. Sadayappan, "Toward Optimizing Latency under Throughput Constraints", Proceedings of Euro-Par, 4641 : pp. 173-183, August, 2007.

Tahsin M. Kurc, X. Zhang, Manish Parashar, Hector Klie, Mary F. Wheeler, Umit V. Catalyurek, Joel H. Saltz, "Dynamic Data-Driven Systems Approach for Simulation Based Optimizations", Computational Science – ICCS 2007, 4487 : pp. 1213-1221, July, 2007.

Stephen Langella, Scott Oster, Shannon L. Hastings, Frank Siebenlist, Tahsin M. Kurc, Joel H. Saltz, "Enabling the Provisioning and Management of a Federated Grid Trust Fabric", 6th Annual PKI R&D Workshop Gaithersburg, Maryland, May, 2007.

Tony C. Pan, Metin N. Gurcan, Stephen Langella, Scott Oster, Shannon L. Hastings, Ashish Sharma, Benjamin Rutt, David W. Ervin, Tahsin M. Kurc, K.M. Siddiqui, Joel H. Saltz, Eliot Siegel, "GridCAD: Grid-based Computer-aided Detection System", RadioGraphics, 27 : pp. 889-897, May, 2007.

T. Tavares, G. Teodoro, Tahsin M. Kurc, Renato A. Ferreira, D. O. G Neto, Wagner Meira Jr., Umit V. Catalyurek, Shannon L. Hastings, Scott Oster, Stephen Langella, Joel H. Saltz, "An Efficient and Reliable Scientific Workflow System", CCGRID 2007, : pp. 445-452, May, 2007.

Bhupesh Bansal, Umit V. Catalyurek, J Chame, C Chen, E Deelman, Y Gil, Mary Hall, Vijay S. Kumar, Tahsin M. Kurc, K Lerman, Aiichiro Nakano, Y Nelson, Joel H. Saltz, Ashish Sharma, Priya Vashishta, "Intelligent Optimization of Parallel and Distributed Applications", 2007 IEEE International Parallel and Distributed Processing Symposium, : pp. 300, March, 2007.

G. Buehrer, Srini Parthasarathy, S. Tatikonda, Tahsin M. Kurc, Joel H. Saltz, "Toward Terabyte Pattern Mining: an architecture-conscious solution", Proceedings of the 12th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPOPP 2007), : pp. 2-12, March, 2007.

Shannon L. Hastings, Scott Oster, Stephen Langella, David W. Ervin, Tahsin M. Kurc, Joel H. Saltz, "Introduce: An Open Source Toolkit for Rapid Development of Strongly Typed Grid Services", Journal of Grid Computing, 4 (5) : pp. 407-427, March, 2007.

A. Ghoting, G. Buehrer, Matthew Goyder, S. Tatikonda, X. Zhang, Srini Parthasarathy, Tahsin M. Kurc, Joel H. Saltz, "Knowledge and Cache Conscious Algorithm Design and Systems Support for Data Mining Algorithms", 2007 IEEE International Parallel and Distributed Processing Symposium, : pp. 310, March, 2007.

Metin N. Gurcan, Tony C. Pan, Ashish Sharma, Tahsin M. Kurc, Scott Oster, Stephen Langella, Shannon L. Hastings, K.M. Siddiqui, Eliot Siegel, Joel H. Saltz, "GridImage: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support", Journal of Digital Imaging, 20 (2) : pp. 160-171, February, 2007.

Cevdet Aykanat, Berkant Barla Cambazoglu, F. Findik, Tahsin M. Kurc, "Adaptive decomposition and remapping algorithms for object-space-parallel direct volume rendering of unstructured grids", Journal of Parallel and Distributed Computing, 67 (1) : pp. 77-99, January, 2007.

Brent Woods, Bradley Clymer, Johannes Heverhagen, Michael K. Knopp, Joel H. Saltz, Tahsin M. Kurc, "Parallel 4-D Haralick Texture Analysis for Disk-resident Image Datasets", Concurrency and Computation: Practice and Experience, 19 (1) : pp. 65-87, December, 2007.

Hector Klie, Wolfgang Bangerth, X. Gai, MF Wheeler, Paul L. Stoffa, Mrinal Sen, Manish Parashar, Umit V. Catalyurek, Joel H. Saltz, Tahsin M. Kurc, "Models, Methods and Middleware for Grid-Enabled Multiphysics Oil reservoir Management", Engineering with Computers, 22 (3) : pp. 349-370, December, 2006.

Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, Sunny Chow, Stephan Lamont, Maryann Martone, "Imaging and Visual Analysis - Large Image Correction and Warping in a Cluster Environment", Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, : pp. 79, November, 2006.

Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurc, Umit V. Catalyurek, Sunny Chow, Stephan Lamont, Maryann Martone, Joel H. Saltz, "Large Image Correction and Warping in a Cluster Environment", Proceedings of the 2006 ACM/IEEE conference on Supercomputing (SC2006), : pp. 38-38, November, 2006.

G. Teodoro, T. Tavares, Renato A. Ferreira, Tahsin M. Kurc, W. Meira Jr., D. Guedes, Tony C. Pan, Joel H. Saltz, "A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments", Computer Architecture and High Performance Computing, 2006. SBAC-PAD, : pp. 81-90, October, 2006.

Naga Vydyanathan, S. Krishnamoorthy, G. Sabin, Umit V. Catalyurek, Tahsin M. Kurc, P. Sadayappan, Joel H. Saltz, "Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications", Proceedings of 2006 IEEE International Conference on Cluster Computing, : pp. 1-10, September, 2006.

Xi Zhang, Benjamin Rutt, Umit V. Catalyurek, Tahsin M. Kurc, Paul L. Stoffa, Mrinal Sen, Joel H. Saltz, "Supporting Scalable and Distributed Data Subsetting and Aggregation in Large-Scale Seismic Data Analysis", The International Journal of High Performance Computing Applications, 20 (3) : pp. 423-438, August, 2006.

Sivaramakrishnan Narayanan, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "On Creating Efficient Object-relational Views of Scientific Datasets", Proceedings of the 2006 International Conference on Parallel Processing (ICPP-06), : pp. 551-558, August, 2006.

Naga Vydyanathan, S. Krishnamoorthy, G. Sabin, Umit V. Catalyurek, Tahsin M. Kurc, P. Sadayappan, Joel H. Saltz, "An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications", Proceedings of the 2006 International Conference on Parallel Processing (ICPP-06), : pp. 443-450, August, 2006.

Li Weng, Umit V. Catalyurek, Tahsin M. Kurc, Gagan Agrawal, Joel H. Saltz, "Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries", Proceedings of the 2006 International Conference on Parallel Processing (ICPP-06), : pp. 271-280, August, 2006.

Gaurav Khanna, Umit V. Catalyurek, Tahsin M. Kurc, P. Sadayappan, Joel H. Saltz, "A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs with File Sharing", Proceedings of the 12th International Workshop on Job Scheduling Strategies for Parallel Processing (JSSPP 2006), June, 2006.

Gaurav Khanna, Naga Vydyanathan, Umit V. Catalyurek, Tahsin M. Kurc, S. Krishnamoorthy, P. Sadayappan, Joel H. Saltz, "Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O", Proceedings of the 15th IEEE International Symposium on High-Performance Distributed Computing (HPDC-15), : pp. 241-252, June, 2006.

Stephen Langella, Scott Oster, Shannon L. Hastings, Frank Siebenlist, Tahsin M. Kurc, Joel H. Saltz, "Dorian: Grid Service Infrastructure for Identity Management and Federation", The 19th IEEE Symposium on Computer-Based Medical Systems, : pp. 756-761, June, 2006.

Joel H. Saltz, Scott Oster, Shannon L. Hastings, Stephen Langella, William Sanchez, Manav Kher, Peter A. Covitz, Tahsin M. Kurc, Krishnakant Shanbhag, "caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid", Bioinformatics, 22 (15) : pp. 1910-1916, June, 2006.

Manish Parashar, Vincent Matossian, Hector Klie, Sunil G. Thomas, Mary F. Wheeler, Tahsin M. Kurc, Joel H. Saltz, "Towards Dynamic Data-Driven Management of the Ruby Gulch Waste Repository", Lecture Notes in Computer Science, 3993 : pp. 384-392, May, 2006.

Naga Vydyanathan, Gaurav Khanna, Umit V. Catalyurek, Tahsin M. Kurc, Joel H. Saltz, P. Sadayappan, "Scheduling of Tasks with Batch-Shared I/O on Heterogeneous Systems", Proceedings of 20th International Parallel and Distributed Processing Symposium (IPDPS), April, 2006.

Xi Zhang, Tahsin M. Kurc, Joel H. Saltz, "Design and Analysis of a Multi-dimensional Data Sampling Service for Large Scale Data Analysis Applications", 20th IEEE International Parallel & Distributed Processing Symposium (IPDPS), : pp. 58, April, 2006.

G. Buehrer, A. Ghoting, X. Zhang, S. Tatikonda, Srini Parthasarathy, Tahsin M. Kurc, Joel H. Saltz, "I/O conscious algorithm design and systems support for data analysis on emerging architectures", 20th International Parallel and Distributed Processing Symposium, 2006. IPDPS 2006., : pp. 8, April, 2006.

Tahsin M. Kurc, Daniel A. Janies, Andrew Johnson, Stephen Langella, Scott Oster, Shannon L. Hastings, Farhat Habib, Terry Camerlengo, David W. Ervin, Umit V. Catalyurek, Joel H. Saltz, "An XML-based System for Synthesis of Data from Disparate Databases", Journal of the American Medical Informatics Association, 13 : pp. 289-301, January, 2006.

Shannon L. Hastings, Matheus F. Ribeiro, Stephen Langella, Scott Oster, Umit V. Catalyurek, Tony C. Pan, Kun Huang, Renato A. Ferreira, Joel H. Saltz, Tahsin M. Kurc, "XML Database Support for Distributed Execution of Data-Intensive Scientific Workflows", SIGMOD Record, 34 (3) : pp. 50-55, December, 2005.

Matheus F. Ribeiro, Tahsin M. Kurc, Tony C. Pan, Kun Huang, Umit V. Catalyurek, Xi Zhang, Stephen Langella, Shannon L. Hastings, Scott Oster, Renato A. Ferreira, Joel H. Saltz, "Tools For Efficient Subsetting and Pipelined Processing of Large Scale, Distributed Biomedical Image Data", December, 2005.

Benjamin Rutt, Vijay S. Kumar, Tony C. Pan, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying", IEEE Cluster 2005 Conference, : pp. 1-10, December, 2005.

Sivaramakrishnan Narayanan, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Servicing Seismic and Oil Reservoir Simulation Data Through Grid Data Services", Book Series: Data Management in Grids; Lecture Notes in Computer Science, 3836 : pp. 129-142, December, 2005.

Sivaramakrishnan Narayanan, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Servicing Seismic and Oil Reservoir Simulation Data", September, 2005.

Tahsin M. Kurc, Umit V. Catalyurek, Xi Zhang, Joel H. Saltz, R. Martino, Mary F. Wheeler, Malgorzata Peszynska, Alan Sussman, C. Hansen, Mrinal Sen, Roustam Seifoullaev, Paul L. Stoffa, Carlos Torres-Verdin, Manish Parashar, "A Simulation and Data Analysis System for Large Scale, Data-Driven Oil Reservoir Simulation Studies", Concurrency and Computation: Practice and Experience, 17 (11) : pp. 1441-1467, September, 2005.

L. Weng, Umit V. Catalyurek, Tahsin M. Kurc, Gagan Agrawal, Joel H. Saltz, "Servicing Range Queries on Multidimensional Datasets with Partial Replicas", Proceedings of Cluster Computing and Grid 2005 (CCGrid05), : pp. 726-733, June, 2005.

H. Wang, Srini Parthasarathy, A. Ghoting, S. Tatikonda, G. Buehrer, Tahsin M. Kurc, Joel H. Saltz, "Design of a Next-generation Sampling Service for Large Scale Data Analysis Applications", 19th ACM International Conference on Supercomputing (ICS, : pp. 91-100, June, 2005.

Gaurav Khanna, Naga Vydyanathan, Tahsin M. Kurc, Umit V. Catalyurek, Pete Wyckoff, Joel H. Saltz, P. Sadayappan, "A Hypergraph Partitioning Based Approach for Scheduling of Tasks with Batch-Shared I/O", Cluster Computing and Grid 2005, 2 : pp. 792-799, May, 2005.

Manish Parashar, Vincent Matossian, Wolfgang Bangerth, Hector Klie, Benjamin Rutt, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, Mary F. Wheeler, "Towards Dynamic Data-Driven Optimization of Oil Well Placement", Lecture Notes in Computer Science, 3515 : pp. 656-663, April, 2005.

Shannon L. Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurc, Tony C. Pan, Umit V. Catalyurek, Daniel A. Janies, Joel H. Saltz, "Grid-based Management of Biomedical Data using an XML-based Distributed Data Management System", Proceedings of the 19th Annual ACM Symposium on Applied Computing (SAC '05), : pp. 105-109, March, 2005.

Shannon L. Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurc, Tony C. Pan, Umit V. Catalyurek, Joel H. Saltz, "A Grid-Based Image Archival and Analysis System", Journal of the American Informatics Association (JAMIA), : pp. 286-295, March, 2005.

Vijay S. Kumar, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Design and Implementation of a Data Server Using a Peer-to-Peer Storage System", Proceedings of the 2005 Spring Simulation Multiconference, March, 2005.

Sivaramakrishnan Narayanan, Umit V. Catalyurek, Tahsin M. Kurc, Vijay S. Kumar, Joel H. Saltz, "A Runtime Framework for Partial Replication and Its Application for On-Demand Data Exploration", Proceedings of the 2005 Spring Simulation Multiconference, March, 2005.

Stephen Langella, Shannon L. Hastings, Scott Oster, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "A Distributed Data Management Middleware for Data-Driven Application Systems", Proceedings of the 2004 IEEE International Conference on Cluster Computing, : pp. 267-276, February, 2005.

Tony C. Pan, Daniel Cowden, Umit V. Catalyurek, Scott Jewell, Shannon L. Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurc, Joel H. Saltz, "Virtual Microscopy: Distributed Image Storage, Retrieval, Analysis, and Visualization", Parallel Computing in Bioinformatics, John Wiley & Sons, Albert Zomaya, January, 2005.

Manish Parashar, Hector Klie, Umit V. Catalyurek, Tahsin M. Kurc, Vincent Matossian, Joel H. Saltz, Mary F. Wheeler, "Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies", Future Generation Computer Systems, 21 (1) : pp. 19-26, January, 2005.

Brent Woods, Bradley Clymer, Joel H. Saltz, Tahsin M. Kurc, "A Parallel Implementation of 4-Dimensional Haralick Texture Analysis for Disk-Resident Image Datasets", Supercomputing, 2004. Proceedings of the ACM/IEEE SC2004 Conference, : pp. 48-48, November, 2004.

Naga Vydyanathan, Gaurav Khanna, Tahsin M. Kurc, Umit V. Catalyurek, Pete Wyckoff, Joel H. Saltz, P. Sadayappan, "Use of PVFS for Efficient Execution of Jobs with Pipeline-Shared I/O", Proceedings of the Fifth IEEE/ACM International Workshop on Grid Computing, 2004, : pp. 235-242, November, 2004.

Henrique Andrade, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Optimizing the Execution of Multiple Data Analysis Queries in Parallel and Distributed Environments", IEEE Transactions on Parallel and Distributed Systems, 15 (6) : pp. 520-532, June, 2004.

Manish Parashar, Hector Klie, Umit V. Catalyurek, Tahsin M. Kurc, Vincent Matossian, Joel H. Saltz, Mary F. Wheeler, "Applications of Grid-enabled Technologies for Solving Optimization Problems in Data-Driven Reservior Studies", Proceedings of the Workshop on Distributed Data Driven Applications and Systems (ICCS 2004), June, 2004.

Xi Zhang, Tahsin M. Kurc, Tony C. Pan, Umit V. Catalyurek, Sivaramakrishnan Narayanan, Pete Wyckoff, Joel H. Saltz, "Strategies for Using Additional Resources in Parallel", Proceedings of 13th IEEE International Symposium on High Performance Distributed Computing, 2004, (HPDC-13), : pp. 4-13, June, 2004.

L. Weng, Gagan Agrawal, Umit V. Catalyurek, Tahsin M. Kurc, Sivaramakrishnan Narayanan, Joel H. Saltz, "An Approach for Automatic Data Virtualization", Proceedings of the 13th IEEE International Symposium on High-Performance Distributed Computing (HPDC-13), : pp. 24-33, June, 2004.

Xi Zhang, Tony C. Pan, Umit V. Catalyurek, Tahsin M. Kurc, Joel H. Saltz, "Serving queries to multi-resolution datasets on disk-based storage clusters", Proceedings of the 4th IEEE International Symposium on Cluster Computing and the Grid, 2004 (CCGrid 2004), : pp. 490-498, April, 2004.

Umit V. Catalyurek, Michael Beynon, Chialin Chang, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "The Virtual Microscope", IEEE Transactions on Information Technology in Biomedicine, Vol. 7 (4) : pp. 230-248, December, 2003.

Sivaramakrishnan Narayanan, Umit V. Catalyurek, Tahsin M. Kurc, Xi Zhang, Joel H. Saltz, "Applying Database Support for Large Scale Data Driven Science in Distributed Environments", Proceedings of the Fourth International Workshop on Grid Computing (Grid 2003), : pp. 141-148, November, 2003.

Radhakrishnan Sundaresan, Mario Lauria, Tahsin M. Kurc, Srini Parthasarathy, Joel H. Saltz, "Adaptive Polling of Grid Resource Monitors Using a Slacker Coherence Model", Proceedings of the 12th IEEE International Symposium on High Performance Distributed Computing (HPDC'03), : pp. 260-269, June, 2003.

Joel H. Saltz, Umit V. Catalyurek, Tahsin M. Kurc, Michael Gray, Shannon L. Hastings, Stephen Langella, Sivaramakrishnan Narayanan, R. Martino, Kelvin Bryant, Malgorzata Peszynska, Mary F. Wheeler, Alan Sussman, Michael Beynon, C. Hansen, Donald Stredney, Dennis Sessana, "Driving Scientific Applications by Data in Distributed Environments", Proceedings of the Workshop on Dynamic Data-Driven Application Systems (ICCS 2003), June, 2003.

Pavan Balaji, Jiesheng Wu, Tahsin M. Kurc, Umit V. Catalyurek, Dhabaleswar K. Panda, Joel H. Saltz, "Impact of High Performance Sockets on Data Intensive Applications", Proceedings of the 12th IEEE International Symposium on High Performance Distributed Computing (HPDC, : pp. 24-33, June, 2003.

Shannon L. Hastings, Lone Aagesen, Lone Aagesen, Muhammad Ali, Muhammad Ali, Tahsin M. Kurc, Stephen Langella, Umit V. Catalyurek, Tony C. Pan, Joel H. Saltz, "Image Processing for the Grid: A Toolkit for Building Grid-enabled Image Processing Applications", Proceedings of the 3rd International Symposium on Cluster Computing and the Grid, : pp. 36-43, May, 2003.

Umit V. Catalyurek, Michael Gray, Tahsin M. Kurc, Joel H. Saltz, Eric A. Stahlberg, Renato A. Ferreira, "A Component-based Implementation of Multiple Sequence Alignment", Proceedings of the 2003 ACM Symposium on Applied Computing, SAC2003, : pp. 122-126, March, 2003.

Sivaramakrishnan Narayanan, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Database Support for Data-Driven Scientific Applications in the Grid", Parallel Processing Letters, 13 (2) : pp. 245-271, January, 2003.

Mary F. Wheeler, Malgorzata Peszynska, C. Dawson, D. Arnold, Tahsin M. Kurc, Manish Parashar, Joel H. Saltz, "Parallel Computing in Environment and Energy", Sourcebook of Parallel Computing, : pp. 145-165, November, 2002.

Matthew Spencer, Renato A. Ferreira, Michael Beynon, Tahsin M. Kurc, Umit V. Catalyurek, Alan Sussman, Joel H. Saltz, "Executing Multiple Pipelined Data Analysis Operations in the Grid", Proceedings of the 2002 ACM/IEEE SC02 Conference, : pp. 1-18, November, 2002.

Henrique Andrade, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Exploiting Functional Decomposition for Efficient Parallel Processing of Multiple Data Analysis Queries", Proceedings of International Parallel and Distributed Processing Symposium (IPDPS 2003), : pp. 10, October, 2002.

Henrique Andrade, Tahsin M. Kurc, Alan Sussman, Eugene Borovikov, Joel H. Saltz, "On Cache Replacement Policies for Servicing Mixed Data Intensive Query Workloads", Proceedings of the Second Workshop on Caching, Coherence and Consistency (WC3-02), June, 2002.

Michael Beynon, Chialin Chang, Umit V. Catalyurek, Tahsin M. Kurc, Alan Sussman, Henrique Andrade, Renato A. Ferreira, Joel H. Saltz, "Processing Large-Scale Multidimensional Data in Parallel and Distributed Environments", Parallel Computing (special issue on parallel data-intensive algorithms and applications), 28 (5) : pp. 827-859, May, 2002.

Henrique Andrade, Tahsin M. Kurc, Joel H. Saltz, Alan Sussman, "Multiple Query Optimization for Data Analysis Applications on Clusters of SMPs", Proceedings of the IEEE International Symposium on Cluster Computing and the Grid (CCGrid2002), : pp. 154, May, 2002.

Henrique Andrade, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Active Proxy-G: Optimizing the Query Execution Process in the Grid", Proceedings of the 2002 ACM/IEEE conference on Supercomputing (SC2002), : pp. 57-57, May, 2002.

Michael Beynon, Tahsin M. Kurc, Umit V. Catalyurek, Alan Sussman, Joel H. Saltz, "Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems", Proceedings of 16th International Parallel and Distributed Processing Symposium (IPDPS), The 11th Heterogeneous Computing Workshop (HCW 2002), : pp. 0084, April, 2002.

Michael Beynon, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Optimizing Execution of Component-based Applications Using Group Instances", Future Generation Computing Systems, 18 (4) : pp. 435-448, April, 2002.

Henrique Andrade, Tahsin M. Kurc, Umit V. Catalyurek, Alan Sussman, Joel H. Saltz, "Persistent Caching in a Multiple Query Optimization Framework", Proceedings of the Sixth Workshop on Languages, Compilers and Run-time Systems for Scalable Computers, March, 2002.

Henrique Andrade, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Scheduling Multiple Data Visualization Query Workloads on a Shared Memory Machine", Proceedings of the Fifth Merged IPPS/SPDP (International Parallel Processing Symposium & Symposium on Parallel and Distributed Processing), : pp. 11-18, March, 2002.

Henrique Andrade, Tahsin M. Kurc, Alan Sussman, Eugene Borovikov, Joel H. Saltz, "Servicing Mixed Data Intensive Query Workloads", February, 2002.

Henrique Andrade, Tahsin M. Kurc, Alan Sussman, Tahsin M. Kurc, "Multiple Query Optimization Support for the Virtual Microscope", Archives of Pathology & Laboratory Medicine, 126 (7) January, 2002.

Henrique Andrade, Tahsin M. Kurc, Alan Sussman, Tahsin M. Kurc, "Multiple Query Optimization Support for the Virtual Microscope", Archives of Pathology & Laboratory Medicine, 126 (7) January, 2002.

Michael Beynon, Tahsin M. Kurc, Umit V. Catalyurek, Chialin Chang, Alan Sussman, Joel H. Saltz, "Distributed Processing of Very Large Datasets with DataCutter", Parallel Computing, 27 (11) : pp. 1457-1478, October, 2001.

Michael Beynon, Alan Sussman, Umit V. Catalyurek, Tahsin M. Kurc, Joel H. Saltz, "Performance Optimization for Data Intensive Grid Applications", Proceedings of the Third Annual International Workshop on Active Middleware Services (AMS2001), : pp. 97-105, September, 2001.

Tahsin M. Kurc, Umit V. Catalyurek, Chialin Chang, Alan Sussman, Joel H. Saltz, "Exploration and Visualization of Very Large Datasets with the Active Data Repository", IEEE Computer Graphics & Applications, Vol. 21 (4) : pp. 24-33, July, 2001.

Tahsin M. Kurc, Tahsin M. Kurc, Umit V. Catalyurek, Umit V. Catalyurek, Chialin Chang, Chialin Chang, Joel H. Saltz, Alan Sussman, Joel H. Saltz, "Visualization of Large Datasets with the Active Data Repository", IEEE Computer Graphics and Applications, Vol. 21 (4) : pp. 24-33, July, 2001.

Tahsin M. Kurc, Tahsin M. Kurc, Umit V. Catalyurek, Umit V. Catalyurek, Chialin Chang, Chialin Chang, Joel H. Saltz, Alan Sussman, Joel H. Saltz, "Visualization of Large Datasets with the Active Data Repository", IEEE Computer Graphics and Applications, Vol. 21 (4) : pp. 24-33, July, 2001.

Tahsin M. Kurc, Henrique Andrade, Joel H. Saltz, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Efficient Execution of Multiple Query Workloads in Data Analysis Applications", Proceedings of the 2001 ACM/IEEE conference on Supercomputing (SC2001), : pp. 53, May, 2001.

Tahsin M. Kurc, Henrique Andrade, Joel H. Saltz, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Efficient Execution of Multiple Query Workloads in Data Analysis Applications", Proceedings of the 2001 ACM/IEEE conference on Supercomputing (SC2001), : pp. 53, May, 2001.

Chialin Chang, Tahsin M. Kurc, Alan Sussman, Umit V. Catalyurek, Joel H. Saltz, "A Hypergraph-Based Workload Partitioning Strategy for Parallel Data Aggregation", Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, March, 2001.

Henrique Andrade, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Decision Tree Construction for Data Mining on Clusters of Shared-Memory Multiprocessors", December, 2000.

Tahsin M. Kurc, Mustafa Uysal, Hyseonsang Eom, Jeff Hollingsworth, Joel H. Saltz, Alan Sussman, "Efficient Performance Prediction for Large-Scale Data-Intensive Applications", The International Journal of High Performance Computing Applications, : pp. 216-227, September, 2000.

Michael Beynon, Michael Beynon, Alan Sussman, Tahsin M. Kurc, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, Joel H. Saltz, "Optimizing Execution of Component-based Applications using Group Instances", Proceedings of the IEEE International Symposium on Cluster Computing and the Grid (CCGrid2001), : pp. 56-63, May, 2000.

Michael Beynon, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Design of a Framework for Data-Intensive Wide-Area Applications", Proceedings of the 9th Heterogeneous Computing Workshop (HCW2000), : pp. 116-130, May, 2000.

Tahsin M. Kurc, Michael Beynon, Alan Sussman, Joel H. Saltz, "DataCutter and A Client Interface for the Storage Resource Broker with DataCutter Services", May, 2000.

Chialin Chang, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Optimizing Retrieval and Processing of Multi-dimensional Scientific Datasets", 14th International Parallel and Distributed Processing Symposium (IPDPS'00), : pp. 405, May, 2000.

Michael Beynon, Michael Beynon, Alan Sussman, Tahsin M. Kurc, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, Joel H. Saltz, "Optimizing Execution of Component-based Applications using Group Instances", Proceedings of the IEEE International Symposium on Cluster Computing and the Grid (CCGrid2001), : pp. 56-63, May, 2000.

Michael Beynon, Renato A. Ferreira, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "DataCutter: Middleware for Filtering Very Large Scientific Datasets on Archival Storage Systems", Eighth NASA Goddard Conference on Mass Storage Systems and Technologies/Seventeenth IEEE Symposium on Mass Storage Systems, : pp. 119-133, March, 2000.

H. Kutluca, Tahsin M. Kurc, Cevdet Aykanat, "Image-Space Decomposition Algorithms for Sort-First Parallel Volume Rendering of Unstructured Grids", The Journal of Supercomputing, 15 (1) : pp. 51-93, January, 2000.

Tahsin M. Kurc, Chialin Chang, Renato A. Ferreira, Alan Sussman, Joel H. Saltz, "Querying Very Large Multi-dimensional Datasets in ADR", Proceedings of the 1999 ACM/IEEE SC99 Conference, November, 1999.

Renato A. Ferreira, Tahsin M. Kurc, Michael Beynon, Chialin Chang, Alan Sussman, Joel H. Saltz, "Object-Relational Queries into Multi-dimensional Databases with the Active Data Repository", Parallel Processing Letters, 9 (2) : pp. 173-199, June, 1999.

Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Coupling Multiple Simulations via a High Performance Customizable Database System", Proceedings of the Ninth SIAM Conference on Parallel Processing for Scientific Computing, March, 1999.

Chialin Chang, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Query Planning for Range Queries with User-defined Aggregation on Multi-dimensional Scientific Datasets", February, 1999.

Tahsin M. Kurc, Cevdet Aykanat, B. Ozguc, "Object-space Parallel Polygon Rendering on Hypercubes", Computers & Graphics, 22 (4) : pp. 487-503, August, 1998.

Mustafa Uysal, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "A Performance Prediction Framework for Data Intensive Applications on Large Scale Parallel Machines", 1511 : pp. 243-258, July, 1998.

Tahsin M. Kurc, Cevdet Aykanat, B. Ozguc, "A parallel scaled conjugate-gradient algorithm for the solution phase of gathering radiosity on hypercubes", The Visual Computer, 13 (1) : pp. 1-19, February, 1997.

Ashish Sharma, Tony C. Pan, Berkant Barla Cambazoglu, Shannon L. Hastings, Metin N. Gurcan, Tahsin M. Kurc, Joel H. Saltz, "VirtualPACS - A Federating Gateway to Access Remote Image Data Resources over the Grid", Journal of Digital Imaging, December, 0000.

Presentations

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Stephen Langella, Scott Oster, Shannon L. Hastings, Frank Siebenlist, Joshua Phillips, David W. Ervin, Justin D. Permar, Tahsin M. Kurc, Joel H. Saltz, "The Cancer Biomedical Informatics Grid (caBIG™) Security Infrastructure", in Proceedings of 2007 AMIA Annual Symposium, Chicago, Illinois, 2007

Scott Oster, Stephen Langella, Shannon L. Hastings, David W. Ervin, Ravi Madduri, Tahsin M. Kurc, Frank Siebenlist, Peter A. Covitz, Krishnakant Shanbhag, Ian Foster, Joel H. Saltz, "caGrid 1.0: A Grid Enterprise Architecture for Cancer Research", in Proceedings of American Medical Informatics Association (AMIA) 2007 Annual Symposium, Chicago, IL, 2007

Vijay S. Kumar, Tahsin M. Kurc, Umit V. Catalyurek, Metin N. Gurcan, Joel H. Saltz, "Performance vs. Accuracy Trade-offs for Large-scale Image Analysis Applications", in Proceedings of IEEE Cluster 2007: Conference on Cluster Computing, Austin, Texas, 2007

Scott Oster, Tahsin M. Kurc, Shannon L. Hastings, "Part B: Case Study on Grid Enabling Your Silver-Level Compatible System", in Proceedings of caBIG Annual Meeting 2007, Washington, D.C., 2007

Scott Oster, Shannon L. Hastings, Stephen Langella, David W. Ervin, Tahsin M. Kurc, Joel H. Saltz, "caGrid 1.0 Overview (poster)", in Proceedings of caBIG Annual Meeting 2007, Washington, D.C., 2007

Shannon L. Hastings, David W. Ervin, Scott Oster, Stephen Langella, Tahsin M. Kurc, Joel H. Saltz, "Introduce: Grid Service Authoring Toolkit (poster)", in Proceedings of caBIG Annual Meeting 2007, Washington, D.C., 2007

Stephen Langella, Scott Oster, Shannon L. Hastings, David W. Ervin, Tahsin M. Kurc, Joel H. Saltz, "caGrid 1.0 Security Infrastructure (poster)", in Proceedings of caBIG Annual Meeting 2007, Washington, D.C., 2007

Benjamin Rutt, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Use of the Teragrid for Sub-surface Modeling and Oil Reservoir Management Studies", in Proceedings of Teragrid 2006, Indianapolis, IN, 2006

Naga Vydyanathan, Gaurav Khanna, Umit V. Catalyurek, Tahsin M. Kurc, P. Sadayappan, Joel H. Saltz, "Scheduling of Tasks with Batch-shared I/O on Heterogeneous Systems", in Proceedings of Heterogeneous Computing Workshop 2006, 2006

Benjamin Rutt, Vijay S. Kumar, Tony C. Pan, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying", in Proceedings of IEEE International Conference on Cluster Computing, Boston, Massachusetts, USA, 2005

Sivaramakrishnan Narayanan, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Servicing Seismic and Oil Reservoir Simulation Data through Grid Data Services", in Proceedings of Very Large Databases (VLDB) Workshop on Data Management in Grids, Trondheim, Norway, 2005

Umit V. Catalyurek, Tahsin M. Kurc, Gagan Agrawal, Joel H. Saltz, "Servicing Range Queries on Multidimensional Datasets with Partial Replicas", in Proceedings of Cluster Computing and Grid 2005 (CCGrid'05), Cardiff, United Kingdom, 2005

Gaurav Khanna, Naga Vydyanathan, Tahsin M. Kurc, Umit V. Catalyurek, Pete Wyckoff, Joel H. Saltz, P. Sadayappan, "A Hypergraph Partitioning Based Approach for Scheduling of Tasks with Batch-Shared I/O", in Proceedings of Cluster Computing and Grid 2005 (CCGrid'05), Cardiff, United Kingdom, 2005

Scott Oster, Stephen Langella, Shannon L. Hastings, Tahsin M. Kurc, Joel H. Saltz, "XML-based Data Management Support for Biomedical Applications", in Proceedings of 2005 caBIG (cancer Biomedical Informatics Grid) Annual Meeting, Washington, D.C., 2005

Shannon L. Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurc, Tony C. Pan, Joel H. Saltz, "GridPacs: A Grid-enabled System for Management and Analysis of Large Image Datasets", in Proceedings of SuperComputing 2004 (SC2004), Pittsburgh, PA, 2004

Stephen Langella, Shannon L. Hastings, Scott Oster, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "A Distributed Data Management Middleware for Data-Driven Application Systems", in Proceedings of Cluster 2004, San Diego, CA, 2004

Umit V. Catalyurek, Tahsin M. Kurc, Joel H. Saltz, "Middleware Infrastructure for Large-Scale Data Management", in Proceedings of ASC VIEWS Alliance Forum, Salt Lake City, UT, 2004

Scott Oster, Shannon L. Hastings, Stephen Langella, Tahsin M. Kurc, Joel H. Saltz, "caBig and the Mobius Project", in Proceedings of caBIG Architecture Workspace, Video teleconference, Columbus, OH, 2004

Xi Zhang, Tahsin M. Kurc, Tony C. Pan, Umit V. Catalyurek, Sivaramakrishnan Narayanan, Pete Wyckoff, Joel H. Saltz, "Strategies for Using Additional Resources in Parallel Hash-based Join Algorithms", in Proceedings of 13th IEEE International Symposium on High-Performance Distributed Computing (HPDC-13), Honolulu, HI, 2004

Xi Zhang, Tony C. Pan, Umit V. Catalyurek, Tahsin M. Kurc, Joel H. Saltz, "Serving Queries to Multi-Resolution Datasets on Disk-based Storage Clusters", in Proceedings of 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid04), Chicago, IL, 2004

John D. Fleig, Bradley Clymer, Tahsin M. Kurc, Joel H. Saltz, "Performance review of distributed medical image processing", in Proceedings of Consortium for Computing Sciences in Colleges Midwest 2003 Regional Conference, Dennison, OH, 2003

Tahsin M. Kurc, Mario Lauria, Srini Parthasarathy, Joel H. Saltz, Radhakrishnan Sundaresan, "A Slacker Coherence Protocol for Pull-based Monitoring of on-line Data Sources", in Proceedings of CCGrid 2003, 2003

Tahsin M. Kurc, Joel H. Saltz, "DataCutter Overview", in Proceedings of 2003

Tahsin M. Kurc, "Systems Support for Large Scale Data Exploration and Analysis in Earth Systems Sciences", in Proceedings of 2003

Tahsin M. Kurc, "SC2003 sample visual aids", in Proceedings of SC2003, 2003

Tahsin M. Kurc, Joel H. Saltz, "Enabling Biomedical Informatics with Grid Computing", in Proceedings of APIII 2002, 2002

Tech Reports

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Joel H. Saltz, Shannon L. Hastings, Stephen Langella, Scott Oster, David W. Ervin, Ashish Sharma, Tony C. Pan, Metin N. Gurcan, Subhashree Madhavan, Ravi Madduri, Enrico Caserta, Justin D. Permar, Renato A. Ferreira, Philip R. Payne, Umit V. Catalyurek, Gustavo Leone, M. Ostrowski, Kenneth H Buetow, Krishnakant Shanbhag, Eliot Siegel, Ian Foster, Tahsin M. Kurc, "e-Science, caGrid, and Translational Biomedical Research", Technical Report, No. OSUBMI_TR_2008_n01, Biomedical Informatics, 2008.

Sivaramakrishnan Narayanan, Tahsin M. Kurc, Joel H. Saltz, "Support for Spatial Queries in Semantically Annotated Scientific Datasets", Technical Report, No. OSUBMI_TR_2007_n14, Biomedical Informatics, 2007.

Ashish Sharma, Tony C. Pan, Berkant Barla Cambazoglu, Shannon L. Hastings, Metin N. Gurcan, Tahsin M. Kurc, Joel H. Saltz, "VirtualPACS - A Federating Gateway to Access REmote Image Data Resources over the Grid", Technical Report, Biomedical Informatics, 2007.

Tony C. Pan, Justin D. Permar, Stephen Langella, Ashish Sharma, Shannon L. Hastings, Scott Oster, Berkant Barla Cambazoglu, Benjamin Rutt, Metin N. Gurcan, Tahsin M. Kurc, Joel H. Saltz, "Securing Data Access and Protecting Patient Privacy in Grid-Enabled Cancer Imaging Applications", Technical Report, No. OSUBMI_TR_2007_N05, Biomedical Informatics, 2007.

Sivaramakrishnan Narayanan, Tahsin M. Kurc, Joel H. Saltz, "DBOWL: Towards Extensional Queries on a Billion Statements using Relational Databases", Technical Report, No. OSUBMI_TR_2006_n03, Biomedical Informatics, 2006.

Stephen Langella, Scott Oster, Shannon L. Hastings, Frank Siebenlist, Tahsin M. Kurc, Joel H. Saltz, "Dorian: Grid Service Infrastructure for Identity Management and Federation", Technical Report, Biomedical Informatics, 2006.

Sivaramakrishnan Narayanan, Umit V. Catalyurek, Tahsin M. Kurc, Vijay S. Kumar, Joel H. Saltz, "A Runtime Framework for Partial Replication and Its Application for On-Demand Data Exploration", Technical Report, No. OSUBMI_TR_2005_n04, Biomedical Informatics, 2005.

Vijay S. Kumar, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Design and Implementation of a Data Server Using a Peer-to-Peer Storage System", Technical Report, No. OSUBMI_TR_2005_n03, Biomedical Informatics, 2005.

Tahsin M. Kurc, "GridDB-Lite: Database Support for Data-Driven Scientific Applications in the Grid", Technical Report, No. OSUBMI_TR_2005_n01, Biomedical Informatics, 2005.

Tahsin M. Kurc, Umit V. Catalyurek, Xi Zhang, Joel H. Saltz, R. Martino, Mary F. Wheeler, Malgorzata Peszynska, Alan Sussman, C. Hansen, Mrinal Sen, Roustam Seifoullaev, Paul L. Stoffa, Carlos Torres-Verdin, Manish Parashar, "A Simulation and Data Analysis System for Large Scale, Data-Driven Oil Reservoir Simulation Studies", Technical Report, No. OSUBMI_TR_2004_n16, Biomedical Informatics, 2004.

Shannon L. Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurc, Tony C. Pan, Umit V. Catalyurek, Joel H. Saltz, "A Grid Based Image Archival and Analysis System", Technical Report, No. OSUBMI_TR_2004_n04, Biomedical Informatics, 2004.

Stephen Langella, Shannon L. Hastings, Scott Oster, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "A Distributed Data Management Middleware for Data-Driven Application Systems", Technical Report, No. OSUBMI_TR_2004_n10, Biomedical Informatics, 2004.

Xi Zhang, Tahsin M. Kurc, Tony C. Pan, Umit V. Catalyurek, Sivaramakrishnan Narayanan, Pete Wyckoff, Joel H. Saltz, "Strategies for Using Additional Resources in Parallel Hash-based Join Algorithms", Technical Report, No. OSUBMI_TR_2004_n05, Biomedical Informatics, 2004.

Gagan Agrawal, Umit V. Catalyurek, Tahsin M. Kurc, Sivaramakrishnan Narayanan, Joel H. Saltz, "An Approach for Automatic Data Virtualization", Technical Report, No. OSUBMI_TR_2004_n06, Biomedical Informatics, 2004.

Xi Zhang, Tony C. Pan, Umit V. Catalyurek, Tahsin M. Kurc, Joel H. Saltz, "Serving Queries to Multi-Resolution Datasets on Disk-based Storage Clusters", Technical Report, No. OSUBMI_TR_2004_n07, Biomedical Informatics, 2004.

Tahsin M. Kurc, Feng Lee, Gagan Agrawal, Umit V. Catalyurek, Renato A. Ferreira, Joel H. Saltz, "Optimizing Reduction Computations In a Distributed Environment", Technical Report, No. OSUBMI_TR_2003_n01, Biomedical Informatics, 2003.

Sivaramakrishnan Narayanan, Umit V. Catalyurek, Tahsin M. Kurc, Xi Zhang, Joel H. Saltz, "Applying Database Support for Large Scale Data Driven Science in Distributed Environments", Technical Report, No. OSUBMI_TR_2003_n02, Biomedical Informatics, 2003.

Shannon L. Hastings, Tahsin M. Kurc, Stephen Langella, Umit V. Catalyurek, Tony C. Pan, Joel H. Saltz, "Image Processing for the Grid: A Toolkit for Building Grid-enabled Image Processing Applications", Technical Report, No. OSUBMI_TR_2003_n03, Biomedical Informatics, 2003.

Sivaramakrishnan Narayanan, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Database Support for Data-driven Scientific Applications in the Grid", Technical Report, No. OSUBMI_TR_2002_n01, Biomedical Informatics, 2002.

Michael Beynon, Chialin Chang, Umit V. Catalyurek, Tahsin M. Kurc, Alan Sussman, Henrique Andrade, Renato A. Ferreira, Joel H. Saltz, "Processing Large-Scale Multidimensional Data in Parallel and Distributed Environments", Technical Report, No. OSUBMI_TR_2002_n02, Biomedical Informatics, 2002.

Michael Beynon, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "A Component-based Implementation of Iso-surface Rendering for Visualizing Large Datasets", Technical Report, No. CS-TR-4249, Biomedical Informatics, 2001.


Abstracts

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L. Weng, Umit V. Catalyurek, Tahsin M. Kurc, Gagan Agrawal, Joel H. Saltz, "Optimizing Multiple Queries on Scientific Datasets with Partial Replicas", Proceedings of the 8th IEEE/ACM International Conference on Grid Computing (GRID 2007), Austin, Texas, September 2007

Joel H. Saltz, Tony C. Pan, Ashish Sharma, Tahsin M. Kurc, Stephen Langella, Shannon L. Hastings, Scott Oster, Metin N. Gurcan, "gridImage-Grid Computing to Middleware Support Human Markup and Multiple CAD Systems", 92nd Scientific Assembly and Annual Meeting of Radiological Society of North America (RSNA), Chicago, Illinois, November 2006

Joel H. Saltz, Tahsin M. Kurc, Stephen Langella, Shannon L. Hastings, Scott Oster, Ashish Sharma, Metin N. Gurcan, "caGrid (Cancer Grid) Middleware- Connecting Healthcare to the Grid", 92nd Scientific Assembly and Annual Meeting of Radiological Society of North America (RSNA), Chicago, Illinois, November 2006

Sivaramakrishnan Narayanan, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "On Creating Efficient Object-Relational Views of Scientific Datasets",

Stephen Langella, Shannon L. Hastings, Scott Oster, Tahsin M. Kurc, Joel H. Saltz, "Grid PACS: A Grid-Enabled System for Management and Analysis of Large-Image Data Sets", Advancing Practice, Instruction, and Innovation Through Informatics (APIII 2004), Pittsburgh, Pennsylvania, October 2004

Tahsin M. Kurc, Wolfgang Bangerth, Hector Klie, Mrinal Sen, Paul L. Stoffa, Mary F. Wheeler, Umit V. Catalyurek, Benjamin Rutt, Joel H. Saltz, Manish Parashar, "‘Where is my oil, dude?’ Supporting Dynamic, Data-Driven Oil Reservoir Simulation Studies on the Grid", Supercomputing 2004 (SC2004), Pittsburgh, PA, November 2004

Shannon L. Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurc, Joel H. Saltz, "Grid PACS: A Grid-Enabled System for Management and Analysis of Large Image Datasets", Advancing Practice, Instruction and Innovation Through Informatics (APIII), Frontiers in Oncology and Pathology Informatics, Pittsburgh, PA, October 2004

Scott Oster, Shannon L. Hastings, Stephen Langella, Tahsin M. Kurc, Joel H. Saltz, "Data Management and Exchange in the Cancer Grid", Advancing Practice, Instruction and Innovation Through Informatics (APIII), Frontiers in Oncology and Pathology Informatics, Pittsburgh, PA, October 2004

Tony C. Pan, Shannon L. Hastings, Stephen Langella, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Utilizing Advances in Grid Computation to Enhance Clinical and Scientific Research", RSNA '03 (Radiological Society of North America) Scientific Assembly and Annual Meeting, Chicago, IL, December 2003

Xi Zhang, Tony C. Pan, Scott Oster, Shannon L. Hastings, Tahsin M. Kurc, Umit V. Catalyurek, Joel H. Saltz, "Grid-Based Image Analysis and Visualization", Vis 2003, Seattle, WA, October 2003

Tahsin M. Kurc, Shannon L. Hastings, Umit V. Catalyurek, Joel H. Saltz, John D. Fleig, Bradley Clymer, H. von Tengg-Kobligk, Klaus T. Baudendistel, Raghu Machiraju, Michael K. Knopp, "A Distributed Execution Environment for Analysis of DCE-MR Image Datasets",

Shannon L. Hastings, Michael Gray, Tahsin M. Kurc, Umit V. Catalyurek, Tyler Gingrich, Donn Young, Joel H. Saltz, "Grid Support for Collaborative Clinical and Biomedical Research Studies", Seventh Annual Conference for Advancing Pathology Informatics, Imaging and the Internet (APIII), Pittsburgh, PA, October 2002

Robert E. Bodenheimer, Mary E. Edgerton, Mark S. Ross, Shannon L. Hastings, David Romer, Umit V. Catalyurek, Tahsin M. Kurc, Joel H. Saltz, Benoit Dawant, "Registration and Alignment of Histopathological Images", Seventh Annual Conference for Advancing Pathology Informatics, Imaging and the Internet (APIII), Pittsburgh, PA, October 2002

Henrique Andrade, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Multiple-Query Optimiztation Support for the Virtual Microscope", Sixth Annual Advancing Pathology Informatics, Imaging and the Internet (APIII 2001), Pittsburgh, PA, October 2001

Umit V. Catalyurek, Tahsin M. Kurc, Alan Sussman, Joel H. Saltz, "Improving the Performance and Functionality of the Virtual Microscope", Fifth Annual Advancing Pathology Informatics, Imaging and the Internet (APIII 2000), Pittsburgh, PA, October 2000

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